Switching between InnoDB and XtraDB
MariaDB 5.5 comes with both XtraDB (compiled in) and InnoDB (as a plugin). By default MariaDB 5.5 uses XtraDB. If you want to switch to use InnoDB you can do:
mysqld --ignore-builtin-innodb --plugin-load=innodb=ha_innodb.so \ --plugin_dir=/usr/local/mysql/lib/mysql/plugin
(plugin_dir should point to where ha_innodb.so is installed)
The above options can of course also be added to your my.cnf file:
[mysqld] ignore-builtin-innodb plugin-load=innodb=ha_innodb.so plugin_dir=/usr/local/mysql/lib/mysql/plugin
If you want you can also compile MariaDB with InnoDB as default.