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First find out where the program is located on disk.
$ type updatedb updatedb is /usr/bin/updatedb
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Next find out what package provides
updatedb
.$ rpm -qf /usr/bin/updatedb mlocate-0.26-3.fc19.x86_64
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See if anything requires
mlocate
.$ rpm -q --whatrequires mlocate no package requires mlocate
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Nothing requires it so you can remove the package.
$ yum remove mlocate